In relation to this, I used a different strategy to get a transparent video which I was then able to incorporate into Shotcut again.
I recently tested WebM VP8 and WebM VP9 (with alpha channel) export.
I didn’t need to add a green color track for the chroma key because I only exported a video track with audio-only and the audio spectrum display filter. With this, I got a video with a transparent area without the need for a chroma key.