Hi res/low res

I am running the latest version of Shotcut and have a project that I have been working on for quite a while. Over the past few weeks I have reworked some of the chapters, fine tuning both video and audio, and something curious happens when I export the files: Some of the footage/clips (but not all) come out in very poor quality. When I compare the exported files to the earlier exports of the very same footage, the is a very distinct difference.
What am I doing wrong? Anybody got any ideas?

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